cli¶

tiatoolbox . cli

Console script for tiatoolbox.

Functions

Return a string with tiatoolbox package version and python version.

`common`	Define common code required for cli.
`deep_feature_extractor`	Process a set of input images with a deep feature extractor engine.
`multitask_segmentor`	Process a set of input images with a multitask segmentation engine.
`nucleus_detector`	Process a set of input images with a nucleus detection engine.
`nucleus_instance_segment`	Process a set of input images with a multitask segmentation engine.
`patch_predictor`	Process an image/directory of input images with a patch classification engine.
`read_bounds`	Read a region in a whole slide image as specified.
`save_tiles`	Display or save WSI metadata.
`semantic_segmentor`	Process a set of input images with a semantic segmentation engine.
`show_wsi`	Show a slide together with any overlays.
`slide_info`	Displays or saves WSI metadata depending on the mode argument.
`slide_thumbnail`	Reads whole slide image thumbnail and shows or saves based on mode argument.
`stain_norm`	Stain normalize an input image/directory of input images.
`tissue_mask`	Generate tissue mask for a WSI.
`visualize`	Launches the visualization tool for the given directory(s).